DATE: 2025-04-28
TIME: 21:58:41
run inlist_starspots_header
DATE: 2025-04-28
TIME: 21:58:41
 reading user weak rate file ../../../data/rates_data/rate_tables/S13_r_be7_wk_li7.h5
 version_number b5488d6
 read inlist_starspots


 The terminal output contains the following information

      'step' is the number of steps since the start of the run,
      'lg_dt' is log10 timestep in years,
      'age_yr' is the simulated years since the start run,
      'lg_Tcntr' is log10 center temperature (K),
      'lg_Dcntr' is log10 center density (g/cm^3),
      'lg_Tmax' is log10 max temperature (K),
      'Teff' is the surface temperature (K),
      'lg_R' is log10 surface radius (Rsun),
      'lg_L' is log10 surface luminosity (Lsun),
      'lg_LH' is log10 total PP and CNO hydrogen burning power (Lsun),
      'lg_L3a' is log10 total triple-alpha helium burning power (Lsun),
      'lg_gsurf' is log10 surface gravity,
      'lg_Lnuc' is log10 nuclear power (Lsun),
      'lg_Lneu' is log10 total neutrino power (Lsun),
      'lg_Lphoto' is log10 total photodisintegration (Lsun),
      'Mass' is the total stellar baryonic mass (Msun),
      'lg_Mdot' is log10 magnitude of rate of change of mass (Msun/year),
      'lg_Dsurf' is log10 surface density (g/cm^3),
      'H_env' is the amount of mass where H is dominant,
      'He_core' is the largest mass where He is dominant.
      'CO_core' is the largest mass where CO is dominant.
      'H_cntr' is the center H1 mass fraction,
      'He_cntr' is the center He4 mass fraction,
      'C_cntr' is the center C12 mass fraction,
      'N_cntr' is the center N14 mass fraction,
      'O_cntr' is the center O16 mass fraction,
      'Ne_cntr' is the center Ne20 mass fraction,
      'gam_cntr' is the center plasma interaction parameter,
      'eta_cntr' is the center electron degeneracy parameter,
      'zones' is the number of zones in the current model,
      'iters' is the number of solver iterations for the current step,
      'retry' is the number of step retries required during the run,
      'dt_limit' is an indication of what limited the timestep.

 All this and more are saved in the LOGS directory during the run.
 create pre-main-sequence model
                                          species  mass          12    9.0000000000000002D-01

                                        relax_num_steps         300

 retry: eos evaluated at too low a density       1
 retry: max residual jumped -- give up in solver       6
 retry: max residual jumped -- give up in solver       8
        100   5.477229   4195.817 -21.589747 -21.589747   0.900000   0.900000   0.700000   0.001039   0.280000  -7.816940    664      3
-5.0000E+00   5.477050   1.423717 -99.000000 -22.233754 -99.000000   0.000000   0.280000   0.008595   0.020000   0.077077      3
 9.5992E-04  -3.199679   2.293394 -99.000000 -99.000000  -8.221544   0.000000   0.003544   0.001867   0.020000  0.000E+00        max_dt

        200   5.477229   4023.279 -21.589752 -21.589752   0.900000   0.900000   0.700000   0.001039   0.280000  -7.816940    657      3
-5.0000E+00   5.477050   1.422749 -99.000000 -22.233759 -99.000000   0.000000   0.280000   0.008595   0.020000   0.077077      3
 1.9599E-03  -3.199679   2.218512 -99.000000 -99.000000  -8.183778   0.000000   0.003544   0.001867   0.020000  0.000E+00        max_dt

        300   5.477230   3945.265 -21.589753 -21.589753   0.900000   0.900000   0.700000   0.001039   0.280000  -7.816940    657      3
-5.0000E+00   5.477050   1.422178 -99.000000 -22.233760 -99.000000   0.000000   0.280000   0.008595   0.020000   0.077077      3
 2.9599E-03  -3.199678   2.183354 -99.000000 -99.000000  -8.160353   0.000000   0.003544   0.001867   0.020000  0.000E+00        max_dt


 finished doing relax num steps

 read history_master.list
 read profile_master.list
                             set_initial_number_retries           0

                        set_uniform_initial_composition
                                             initial_h1    7.3490000000000000D-01
                                             initial_h2    2.7500000000000001D-05
                                            initial_he3    8.5000000000000006D-05
                                            initial_he4    2.3999999999999999D-01
                                          metals AGSS09
 net name pp_extras.net
                                      atm_option: table
 kap_option a09
 kap_CO_option a09_co
 kap_lowT_option lowT_fa05_a09p
                                        OMP_NUM_THREADS           4


__________________________________________________________________________________________________________________________________________________

       step    lg_Tmax     Teff     lg_LH      lg_Lnuc_tot     Mass       H_rich     H_cntr     N_cntr     Y_surf   eta_cntr   zones  retry
  lg_dt_yrs    lg_Tcntr    lg_R     lg_L3a     lg_Lneu     lg_Mdot    He_core    He_cntr    O_cntr     Z_surf   gam_cntr   iters  
    age_yrs    lg_Dcntr    lg_L     lg_LZ      lg_Lphoto   lg_Dsurf   CO_core    C_cntr     Ne_cntr    Z_cntr   v_div_cs       dt_limit
__________________________________________________________________________________________________________________________________________________

 pgstar_out/hr_starspots_000050.ps/vcps
        100   5.505045   3667.377  -9.323053  -9.323053   0.900000   0.900000   0.734900   0.001298   0.240085  -7.643556    626      0
 1.4776E+00   5.505045   1.376091 -99.000000 -21.644809 -10.005128   0.000000   0.240085   0.010739   0.025015   0.077685      5
 5.4325E+02  -3.090804   1.964297 -99.000000 -99.000000  -7.854942   0.000000   0.004427   0.002333   0.025015  0.000E+00    varcontrol

save photos/x00100 for model 100
 pgstar_out/hr_starspots_000100.ps/vcps
 pgstar_out/hr_starspots_000150.ps/vcps
        200   5.743241   3891.149  -4.718950  -4.718950   0.900000   0.900000   0.734900   0.001298   0.240085  -6.832973    665      0
 2.1304E+00   5.743241   1.119712 -99.000000 -17.404220 -10.671465   0.000000   0.240085   0.010739   0.025015   0.077343      6
 7.5904E+03  -2.381974   1.554430 -99.000000 -99.000000  -7.635728   0.000000   0.004427   0.002333   0.025015  0.000E+00    varcontrol

save photos/x00200 for model 200
 pgstar_out/hr_starspots_000200.ps/vcps
 pgstar_out/hr_starspots_000250.ps/vcps
        300   5.978190   4059.308  -0.821603  -0.821603   0.899999   0.899999   0.734900   0.001298   0.240085  -6.021513    748      0
 2.7867E+00   5.978190   0.872340 -99.000000 -13.806533 -11.339946   0.000000   0.240085   0.010739   0.025015   0.077305      5
 3.9223E+04  -1.677767   1.133181 -99.000000 -99.000000  -7.413224   0.000000   0.004427   0.002333   0.025015  0.000E+00    varcontrol

save photos/x00300 for model 300
 pgstar_out/hr_starspots_000300.ps/vcps
 pgstar_out/hr_starspots_000350.ps/vcps
        400   6.210029   4145.020  -2.180122  -2.180122   0.899999   0.899999   0.734886   0.001298   0.240126  -5.217122    780      0
 3.4529E+00   6.210029   0.632477 -99.000000 -10.737890 -12.023007   0.000000   0.240126   0.010739   0.024988   0.077347      6
 3.2679E+05  -0.981579   0.689753 -99.000000 -99.000000  -7.159969   0.000000   0.004427   0.002333   0.024988  0.000E+00    varcontrol

save photos/x00400 for model 400
 pgstar_out/hr_starspots_000400.ps/vcps
 pgstar_out/hr_starspots_000450.ps/vcps
        500   6.436457   4103.129  -6.665631  -6.665631   0.899999   0.899999   0.734886   0.001298   0.240126  -4.431146    781      0
 4.1480E+00   6.436457   0.401017 -99.000000  -8.128806 -12.734615   0.000000   0.240126   0.010739   0.024987   0.077373      6
 1.0271E+06  -0.301869   0.209189 -99.000000 -99.000000  -6.855042   0.000000   0.004427   0.002333   0.024987  0.000E+00    varcontrol

save photos/x00500 for model 500
 pgstar_out/hr_starspots_000500.ps/vcps
 pgstar_out/hr_starspots_000550.ps/vcps
        600   6.648542   3918.516  -3.702945  -3.702945   0.899998   0.899998   0.734886   0.001298   0.240126  -3.607449    808      0
 4.8871E+00   6.648542   0.177750 -99.000000  -5.903167 -13.484318   0.000000   0.240126   0.010739   0.024987   0.079619      5
 4.7399E+06   0.371676  -0.317319 -19.566950 -99.000000  -6.513276   0.000000   0.004427   0.002333   0.024987  0.000E+00    varcontrol

save photos/x00600 for model 600
 pgstar_out/hr_starspots_000600.ps/vcps
 pgstar_out/hr_starspots_000650.ps/vcps
        700   6.848856   4062.492  -2.323269  -2.323269   0.899998   0.899998   0.734878   0.001298   0.240126  -2.035102    831      0
 5.6285E+00   6.848856  -0.007605 -99.000000  -3.720000 -13.986319   0.000000   0.240135   0.010739   0.024987   0.105572      5
 2.5929E+07   1.340209  -0.625346 -18.061800 -99.000000  -6.337367   0.000000   0.004427   0.002333   0.024987  0.000E+00    varcontrol

save photos/x00700 for model 700
 pgstar_out/hr_starspots_000700.ps/vcps
 pgstar_out/hr_starspots_000750.ps/vcps
        800   7.084453   4901.865  -0.446795  -0.446795   0.899962   0.899962   0.630072   0.006448   0.240126  -1.525279    875      0
 8.4370E+00   7.084453  -0.081436 -49.375498  -2.120025 -13.885371   0.000000   0.344205   0.010735   0.024987   0.102801     10
 2.9126E+09   1.930711  -0.446733 -15.778499 -72.621192  -6.554906   0.000000   0.000015   0.002333   0.025722  0.000E+00      XHe_cntr

save photos/x00800 for model 800
 pgstar_out/hr_starspots_000800.ps/vcps
 pgstar_out/hr_starspots_000850.ps/vcps
        900   7.256892   5223.456  -0.060060  -0.060060   0.899567   0.863891   0.000220   0.009863   0.240127  -0.348012    950      0
 7.5215E+00   7.256892   0.056683 -37.147377  -1.488254 -13.357417   0.035676   0.974557   0.006785   0.024987   0.301181     10
 2.0322E+10   2.854141  -0.060109 -99.000000 -49.313074  -6.759265   0.000000   0.000051   0.002333   0.025223  0.000E+00    lg_XH_cntr

save photos/x00900 for model 900
 pgstar_out/hr_starspots_000900.ps/vcps
 pgstar_out/hr_starspots_000950.ps/vcps

__________________________________________________________________________________________________________________________________________________

       step    lg_Tmax     Teff     lg_LH      lg_Lnuc_tot     Mass       H_rich     H_cntr     N_cntr     Y_surf   eta_cntr   zones  retry
  lg_dt_yrs    lg_Tcntr    lg_R     lg_L3a     lg_Lneu     lg_Mdot    He_core    He_cntr    O_cntr     Z_surf   gam_cntr   iters  
    age_yrs    lg_Dcntr    lg_L     lg_LZ      lg_Lphoto   lg_Dsurf   CO_core    C_cntr     Ne_cntr    Z_cntr   v_div_cs       dt_limit
__________________________________________________________________________________________________________________________________________________

       1000   7.306136   4880.703   0.070499   0.070499   0.899401   0.797425   0.000000   0.009867   0.240169   2.899697   1123      0
 7.1488E+00   7.306136   0.180120 -32.741773  -1.183096 -13.105080   0.101976   0.974778   0.006780   0.024987   0.557285     10
 2.3227E+10   3.802919   0.068864 -99.000000 -44.877626  -6.851510   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

save photos/x01000 for model 1000
 pgstar_out/hr_starspots_001000.ps/vcps
 pgstar_out/hr_starspots_001050.ps/vcps
       1100   7.371907   4522.685   0.288904   0.288904   0.899316   0.760788   0.000000   0.009867   0.248397   8.753342   1339      0
 6.7388E+00   7.371907   0.356572 -27.791137  -0.892816 -12.711527   0.138528   0.974778   0.006780   0.024989   0.864044     10
 2.3982E+10   4.571608   0.289424 -99.000000 -40.094008  -6.967771   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

save photos/x01100 for model 1100
 pgstar_out/hr_starspots_001100.ps/vcps
 pgstar_out/hr_starspots_001150.ps/vcps
       1200   7.404395   4490.242   0.637895   0.637895   0.899181   0.731798   0.000000   0.009867   0.262493  12.624108   1475      0
 6.3626E+00   7.404395   0.537740 -25.486456  -0.529942 -12.179391   0.167383   0.974778   0.006780   0.025031   1.001320     10
 2.4360E+10   4.861184   0.639252 -99.000000 -36.366099  -7.169387   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

save photos/x01200 for model 1200
 pgstar_out/hr_starspots_001200.ps/vcps
 pgstar_out/hr_starspots_001250.ps/vcps
       1300   7.433592   4431.585   0.889337   0.889337   0.899021   0.712295   0.000000   0.009867   0.264188  14.483999   1554      0
 6.0057E+00   7.433592   0.675028 -23.786379  -0.275148 -11.789016   0.186726   0.974778   0.006780   0.025039   1.039511      7
 2.4514E+10   4.997543   0.890985 -15.051500 -34.011711  -7.316215   0.000000   0.000052   0.002333   0.025222  0.000E+00       dX/X h1

save photos/x01300 for model 1300
 pgstar_out/hr_starspots_001300.ps/vcps
 pgstar_out/hr_starspots_001350.ps/vcps
       1400   7.457317   4368.980   1.071158   1.071158   0.898852   0.697993   0.000000   0.009867   0.264190  15.570014   1612      0
 5.7367E+00   7.457317   0.778401 -22.363564  -0.092622 -11.502619   0.200859   0.974778   0.006780   0.025039   1.050725      7
 2.4588E+10   5.082699   1.073017 -14.750470 -32.420959  -7.419988   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

save photos/x01400 for model 1400
 pgstar_out/hr_starspots_001400.ps/vcps
 pgstar_out/hr_starspots_001450.ps/vcps

stop because star_age >= max_age
    0.2463000000E+11    0.2463000000E+11

       1497   7.476068   4323.761   1.184484   1.184484   0.898687   0.687092   0.000000   0.009867   0.264190  16.303418   1641      0
 5.2238E+00   7.476068   0.844399 -21.194032   0.020755 -11.320310   0.211594   0.974778   0.006780   0.025039   1.053845      5
 2.4630E+10   5.142813   1.186939 -99.000000 -31.434582  -7.482405   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

                                         solver retries           3

                                    varcontrol dt limit        1158
                                  max increase dt limit         404
                                  max decrease dt limit           2
                                        solver dt limit           2
                                          dX/X dt limit          84
                                    lg_XH_cntr dt limit          91
                                      XHe_cntr dt limit          55

 model saved to final.mod
save photos/x01497 for model 1497
termination code: max_age

                 runtime (minutes), retries, steps       24.20         0      1497
 pgstar_out/hr_starspots_001497.ps/vcps
__________________________________________________________________________________________________________________________________________________

       step    lg_Tmax     Teff     lg_LH      lg_Lnuc_tot     Mass       H_rich     H_cntr     N_cntr     Y_surf   eta_cntr   zones  retry
  lg_dt_yrs    lg_Tcntr    lg_R     lg_L3a     lg_Lneu     lg_Mdot    He_core    He_cntr    O_cntr     Z_surf   gam_cntr   iters  
    age_yrs    lg_Dcntr    lg_L     lg_LZ      lg_Lphoto   lg_Dsurf   CO_core    C_cntr     Ne_cntr    Z_cntr   v_div_cs       dt_limit
__________________________________________________________________________________________________________________________________________________

       1497   7.476068   4323.761   1.184484   1.184484   0.898687   0.687092   0.000000   0.009867   0.264190  16.303418   1641      0
 5.2238E+00   7.476068   0.844399 -21.194032   0.020755 -11.320310   0.211594   0.974778   0.006780   0.025039   1.053845      5
 2.4630E+10   5.142813   1.186939 -99.000000 -31.434582  -7.482405   0.000000   0.000052   0.002333   0.025222  0.000E+00  max increase

DATE: 2025-04-28
TIME: 22:24:20
finished inlist_starspots_header
DATE: 2025-04-28
TIME: 22:24:20
finished inlist_starspots_header
starspots run: test string matches after ./rn
restart from x01300
DATE: 2025-04-28
TIME: 22:24:20
 reading user weak rate file ../../../data/rates_data/rate_tables/S13_r_be7_wk_li7.h5
 version_number b5488d6
 read inlist_starspots
 read restart_photo
 read history_master.list
 read profile_master.list
 net name pp_extras.net
                                      atm_option: table
 kap_option a09
 kap_CO_option a09_co
 kap_lowT_option lowT_fa05_a09p
                                        OMP_NUM_THREADS           4


__________________________________________________________________________________________________________________________________________________

       step    lg_Tmax     Teff     lg_LH      lg_Lnuc_tot     Mass       H_rich     H_cntr     N_cntr     Y_surf   eta_cntr   zones  retry
  lg_dt_yrs    lg_Tcntr    lg_R     lg_L3a     lg_Lneu     lg_Mdot    He_core    He_cntr    O_cntr     Z_surf   gam_cntr   iters  
    age_yrs    lg_Dcntr    lg_L     lg_LZ      lg_Lphoto   lg_Dsurf   CO_core    C_cntr     Ne_cntr    Z_cntr   v_div_cs       dt_limit
__________________________________________________________________________________________________________________________________________________

 pgstar_out/hr_starspots_001350.ps/vcps
       1400   7.457317   4368.980   1.071158   1.071158   0.898852   0.697993   0.000000   0.009867   0.264190  15.570014   1612      0
 5.7367E+00   7.457317   0.778401 -22.363564  -0.092622 -11.502619   0.200859   0.974778   0.006780   0.025039   1.050725      7
 2.4588E+10   5.082699   1.073017 -14.750470 -32.420959  -7.419988   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

save photos/x01400 for model 1400
 pgstar_out/hr_starspots_001400.ps/vcps
 pgstar_out/hr_starspots_001450.ps/vcps

stop because star_age >= max_age
    0.2463000000E+11    0.2463000000E+11

       1497   7.476068   4323.761   1.184484   1.184484   0.898687   0.687092   0.000000   0.009867   0.264190  16.303418   1641      0
 5.2238E+00   7.476068   0.844399 -21.194032   0.020755 -11.320310   0.211594   0.974778   0.006780   0.025039   1.053845      5
 2.4630E+10   5.142813   1.186939 -99.000000 -31.434582  -7.482405   0.000000   0.000052   0.002333   0.025222  0.000E+00    varcontrol

                                         solver retries           3

                                    varcontrol dt limit        1158
                                  max increase dt limit         404
                                  max decrease dt limit           2
                                        solver dt limit           2
                                          dX/X dt limit          84
                                    lg_XH_cntr dt limit          91
                                      XHe_cntr dt limit          55

 model saved to final.mod
save photos/x01497 for model 1497
termination code: max_age
 pgstar_out/hr_starspots_001497.ps/vcps
__________________________________________________________________________________________________________________________________________________

       step    lg_Tmax     Teff     lg_LH      lg_Lnuc_tot     Mass       H_rich     H_cntr     N_cntr     Y_surf   eta_cntr   zones  retry
  lg_dt_yrs    lg_Tcntr    lg_R     lg_L3a     lg_Lneu     lg_Mdot    He_core    He_cntr    O_cntr     Z_surf   gam_cntr   iters  
    age_yrs    lg_Dcntr    lg_L     lg_LZ      lg_Lphoto   lg_Dsurf   CO_core    C_cntr     Ne_cntr    Z_cntr   v_div_cs       dt_limit
__________________________________________________________________________________________________________________________________________________

       1497   7.476068   4323.761   1.184484   1.184484   0.898687   0.687092   0.000000   0.009867   0.264190  16.303418   1641      0
 5.2238E+00   7.476068   0.844399 -21.194032   0.020755 -11.320310   0.211594   0.974778   0.006780   0.025039   1.053845      5
 2.4630E+10   5.142813   1.186939 -99.000000 -31.434582  -7.482405   0.000000   0.000052   0.002333   0.025222  0.000E+00  max increase

DATE: 2025-04-28
TIME: 22:29:51
starspots restart: checksum for final.mod matches after ./re x01300